Very basic plotting of 3D data with interactive thresholding.
background/overlay and corresponding masks could be nifti files names or SpatialImage objects, or 3D ndarrays. If no mask is provided, only non-0 elements are plotted.
Parameters: | do_stretch_colors : bool, optional
vlim : tuple, optional
vlim_type : None or ‘symneg_z’
ncolumns : int or None
nrows : int or None
add_hist : bool or tuple (int, int)
add_info : bool or tuple (int, int)
slices : None or list of int
slice_title : None or str
Available colormaps are presented nicely on : TODO: :
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Notes
No care is taken to deduce the orientation (e.g. Left-to-Right, Posterior-to-Anterior) of fMRI volumes. Therefore all input volumes should be in the same orientation.