Caret Help

Caret Scripting

• Caret Scripting
  

Dialogs

• Capture Image of Window Dialog
  
• Caret File Dialogs
  
• Display Control Dialog
  
• Draw Border Dialog
  
• Draw Border Update Dialog
  
• Metric Clustering and Smoothing
  
• Project Cell or Foci Dialog
  
• Project Cell or Foci to PALS Dialog
  
• Record as MPEG Dialog
  
• Smoothing Dialog
  
• Study Metadata
  
• Surface Region of Interest Dialog
  
• Surface To Volume Dialog
  

Faqs

• Scenes FAQ
  

File Formats

• Caret Data Files
  
• Caret File Formats
  
• Specification File Tags
  

Installation

• caret5 installation
  

Menus

• Attributes Menu
  
• Caret5 Menu
  
• Comm Menu
  
• File Menu
  
• Help Menu
  
• Layers Menu
  
• Surface Menu
  
• View Menu
  
• Volume Menu
  
• Window Menu
  

Misc

• CARET Glossary
  
• Caret 5 Change Log
  
• Erin's CARET instructions for Windows
  
• Inserting Special Characters
  
• Keyboard Commands
  
• Manual Flattening of a Surface
  
• OLD Caret 5 Change Log
  

Pals Volume Normalization

• AFNI Spatial Normalization of Population Average Landmark Surface-based (PALS) Atlas Fiducial Surfaces
  
• Average PALS SPM2 Results Before and After Case 12 Patch
  
• FLIRT Spatial Normalization of Population Average Landmark Surface-based (PALS) Atlas Fiducial Surfaces
  
• MRITOTAL Spatial Normalization of Population Average Landmark Surface-based (PALS) Atlas Fiducial Surfaces
  
• PALS Volume Normalization
  
• SPM2 Spatial Normalization of Population Average Landmark Surface-based (PALS) Atlas Fiducial Surfaces
  
• SPM99 Spatial Normalization of Population Average Landmark Surface-based (PALS) Atlas Fiducial Surfaces
  

Registration Landmarks

• Caret5 Spherical Registration Core 6 Landmark Set
  

Segmentation Peak Tweaking

• Peak Tweaking
  

Source Code

• Building Caret from Source Code
  

Statistics

• Analysis of Variance
  
• Coordinate Difference
  
• Interhemispheric Clusters
  
• Levene Map
  
• Normalization
  
• One Sample and Paired T-Test
  
• Shuffled Cross-Correlation Maps
  
• Subtract Group Average
  
• T-Map
  
• T-Map Shuffled Columns
  
• Two Sample T-Test
  
• Wilcoxon Rank Sum
  
• Z-Map
  

Toolbars

• Main Window Toolbar
  
• Viewing Window Toolbar
  

Tutorials

• Segmenting, Flattening, and Registration
  
• Tutorial - The Basics
  
• User's Guide to Analysis Procedures
  

Volume Normalization

• Reasons to Affine Register Volumes Before Segmenting in Caret