Attributes Menu
Area Colors submenu for dealing with area colors.
Areal Estimation submenu
for dealing with areal estimation
Connectivity displays a
dialog for accessing connectivity functions.
Lat/Long submenu for dealing with latitude/longitude.
Metrics submenu for dealing with metrics.
Paint submenu for dealing with node paints.
Palette submenu for color palettes.
Parameters submenu for parameters file.
Probabilistic Atlas submenu for dealing with probabilistic
atlases
Surface Shape submenu for dealing with surface shape.
Vectors submenu for dealing
with surface vectors.
Vocabulary submenu for
dealing with Vocabulary Files.
Generate Deformation Field launches a dialog for generating
a deformation field. The surfaces specified MUST BE spherical
surfaces.
Generate Topography From Borders and Paint Launches a
dialog for generating visual topography.
Copy Current Coloring to RGB Paint Copies the current node
colors to a new columns in the RGB Paint file.
Copy Current Coloring to RGB Volume Launches a dialog for for
creating an RGB Volume whose voxels are RGB values of a surface
"placed" in the volume.
Map Volumes to Surfaces - Map
volume data files (functional or paint) to a surface.
Area Colors Submenu
Edit Displays a dialog for adding, editing,
and deleting area colors.
Areal Estimation Submenu
Generate Areal Estimation Map launches a dialog for
creating an areal estimation map.
Lat/Long Submenu
Generate Lat/Long on Spherical Surface Launches a dialog that
enables the user to choose the Lat/Long file column and its name which
will contain the latitude/longitude coordinates of all nodes on the
spherical surface in the main window. This assumes that the
default view of the sphere (produced by pressing the "R" button in the
toolbar) is
a dorsal view. Positive latitiude is along the lateral axis and
negative
latitude is along the medial axis.
Metrics Submenu
Clustering and Smoothing Launches a dialog for clustering
and smoothing metric data.
Compute Average and Sample Standard Deviation The average
and sample standard
deviation (when compute the standard deviation the true mean is assumed
to be unknown so division by "N-1" is used when computing the standard
deviation) are computed for each node's metric values. The
results
are placed in metric columns named Average and Deviation. If the
metrics columns named Average or Deviation exist, they are updated but
their values are not included in the computations.
Mathematical Operations Displays a dialog for performing
mathematical operations on columns in a metric file.
Convert Metric Column to Functional Volume Launches
a dialog for creating a volume whose voxels are metric values of a
surface "placed" in the volume.
Convert Metrics to RGB Paint Displays a dialog that
allows three metric columns to be mapped to the red, green, and blue
components of a metric file. This is useful for displaying three
metrics simultaneously.
Paint Submenu
Assign Nodes Within Displayed Borders Any nodes inside a
displayed border are assigned the name of the border. Area colors
are not updated and must be updated by the user. This operation
is typically run on a flat surface.
Cleanup Paint Names Removes unused paint names from the
currently loaded paint file.
Convert Paint Column to Paint Volume Launches a dialog for
creating a volume whose voxels are paint indices of a surface "placed"
in the volume.
Edit Paint Names Launches a dialog for editing
the names contained in the paint file.
Generate Color for Paints Without Colors If there are any
paint names that do not have area colors with names that match exactly,
a new random color is created for the paint name and added to the area
color file.
Palette
Edit Launches a dialog for editing color palettes.
Parameters
Edit Launches a dialog for editing the parameters file.
Probabilistic Atlas
Convert Threshold Coloring to Paint Converts the currently
selected threshold probabilistic overlay/underlay into a paint file
column.
Study Metadata Submenu
Edit Collections Launches
a dialog for editing study collections
Edit Studies
Launches a dialog for editing studies.
Surface Shape Submenu
Clustering and Smoothing Launches a dialog for clustering
and smoothing surface shape data.
Mathematical Operations Displays a dialog for performing
mathematical operations on columns in the surface shape file.
Compute Average and Sample Standard Deviation The average
and standard
deviation (when compute the standard deviation the true mean is assumed
to be
unknown so division by "N-1" is used when computing the standard
deviation) are computed for each node's metric values. The
results
are placed in metric columns named Average and Deviation. If the
metrics columns named Average or Deviation exist, they are updated but
their values are not included in the computations.
Convert Surface Shape Column
to Functional Volume
Launches a dialog for creating a volume whose voxels are surface shape
values of a surface "placed" in the volume.
Vectors Submenu
Create Vectors From Surface Subtraction
- Create vectors between corresponding nodes in two surface currently
loaded in Caret.
Create Vectors from Surface Normals
- Create vectors using the normal vectors from the main window surface.
Vocabulary Submenu
Edit Launches a
dialog for editing the contents of a vocabulary file.
Move Vocabulary Study Info to Study
Metadata File
Moves StudyInfo from the Vocabulary File into the Study Metadata
File. All links from vocabulary to the Study Metadata are
updated. After
this operation is performed, the Vocabulary and Study Metadata
files need to be saved.